Coordinated photomorphogenic UV-B signaling network captured by mathematical modeling

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11539-44. doi: 10.1073/pnas.1412050111. Epub 2014 Jul 21.

Abstract

Long-wavelength and low-fluence UV-B light is an informational signal known to induce photomorphogenic development in plants. Using the model plant Arabidopsis thaliana, a variety of factors involved in UV-B-specific signaling have been experimentally characterized over the past decade, including the UV-B light receptor UV resistance locus 8; the positive regulators constitutive photomorphogenesis 1 and elongated hypocotyl 5; and the negative regulators cullin4, repressor of UV-B photomorphogenesis 1 (RUP1), and RUP2. Individual genetic and molecular studies have revealed that these proteins function in either positive or negative regulatory capacities for the sufficient and balanced transduction of photomorphogenic UV-B signal. Less is known, however, regarding how these signaling events are systematically linked. In our study, we use a systems biology approach to investigate the dynamic behaviors and correlations of multiple signaling components involved in Arabidopsis UV-B-induced photomorphogenesis. We define a mathematical representation of photomorphogenic UV-B signaling at a temporal scale. Supplemented with experimental validation, our computational modeling demonstrates the functional interaction that occurs among different protein complexes in early and prolonged response to photomorphogenic UV-B.

Keywords: light signaling; ordinary differential equation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / growth & development
  • Arabidopsis / metabolism*
  • Arabidopsis / radiation effects*
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / metabolism
  • Light Signal Transduction / radiation effects*
  • Models, Biological*
  • Morphogenesis / radiation effects*
  • Protein Binding / radiation effects
  • Protein Conformation
  • Ultraviolet Rays*

Substances

  • Arabidopsis Proteins