Photophysical and photochemical properties of 4-thiouracil: time-resolved IR spectroscopy and DFT studies

J Phys Chem B. 2014 Jun 5;118(22):5864-72. doi: 10.1021/jp501658a. Epub 2014 May 22.

Abstract

Intensified research interests are posed with the thionucleobase 4-thiouracil (4-TU), due to its important biological function as site-specific photoprobe to detect RNA structures and nucleic acid-nucleic acid contacts. By means of time-resolved IR spectroscopy and density functional theory (DFT) studies, we have examined the unique photophysical and photochemical properties of 4-TU. It is shown that 4-TU absorbs UVA light and results in the triplet formation with a high quantum yield (0.9). Under N2-saturated anaerobic conditions, the reactive triplet undergoes mainly cross-linking, leading to the (5-4)/(6-4) pyrimidine-pyrimidone product. In the presence of O2 under aerobic conditions, the triplet 4-TU acts as an energy donor to produce singlet oxygen (1)O2 by triplet-triplet energy transfer. The highly reactive oxygen species (1)O2 then reacts readily with 4-TU, leading to the products of uracil (U) with a yield of 0.2 and uracil-6-sulfonate (U(SO3)) that is fluorescent at ~390 nm. The product formation pathways and product distribution are well rationalized by the joint B3LYP/6-311+G(d,p) calculations. From dynamics and mechanistic point of views, these results enable a further understanding for 4-TU acting as reactive precursors for photochemical reactions relevant to (1)O2, which has profound implications for photo cross-linking, DNA photodamage, as well as photodynamic therapy studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Light
  • Models, Molecular
  • Oxygen / chemistry
  • Quantum Theory
  • Singlet Oxygen / chemistry
  • Spectrophotometry, Infrared
  • Thiouracil / analogs & derivatives*
  • Thiouracil / chemistry

Substances

  • Singlet Oxygen
  • 4-thiouracil
  • Thiouracil
  • Oxygen