Exome sequencing as a diagnostic tool for pediatric-onset ataxia

Hum Mutat. 2014 Jan;35(1):45-9. doi: 10.1002/humu.22451.

Abstract

Ataxia demonstrates substantial phenotypic and genetic heterogeneity. We set out to determine the diagnostic yield of exome sequencing in pediatric patients with ataxia without a molecular diagnosis after standard-of-care assessment in Canada. FORGE (Finding Of Rare disease GEnes) Canada is a nation-wide project focused on identifying novel disease genes for rare pediatric diseases using whole-exome sequencing. We retrospectively selected all FORGE Canada projects that included cerebellar ataxia as a feature. We identified 28 such families and a molecular diagnosis was made in 13; a success rate of 46%. In 11 families, we identified mutations in genes associated with known neurological syndromes and in two we identified novel disease genes. Exome analysis of sib pairs and/or patients born to consanguineous parents was more likely to be successful (9/13) than simplex cases (4/15). Our data suggest that exome sequencing is an effective first line test for pediatric patients with ataxia where a specific single gene is not immediately suspected to be causative.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Canada
  • Cerebellar Ataxia / diagnosis*
  • Cerebellar Ataxia / genetics*
  • Child
  • Child, Preschool
  • Consanguinity
  • Exome*
  • Genetic Predisposition to Disease
  • Genetic Variation
  • Humans
  • Molecular Diagnostic Techniques
  • Pedigree
  • Polymorphism, Single Nucleotide
  • Retrospective Studies
  • Sequence Analysis, DNA*