RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses

Bioinformatics. 2013 Jul 1;29(13):1687-9. doi: 10.1093/bioinformatics/btt203. Epub 2013 Apr 28.

Abstract

Motivation: RUbioSeq has been developed to facilitate the primary and secondary analysis of re-sequencing projects by providing an integrated software suite of parallelized pipelines to detect exome variants (single-nucleotide variants and copy number variations) and to perform bisulfite-seq analyses automatically. RUbioSeq's variant analysis results have been already validated and published.

Availability: http://rubioseq.sourceforge.net/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Copy Number Variations
  • DNA Methylation
  • Exome*
  • Genetic Variation*
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Polymorphism, Single Nucleotide
  • Sequence Analysis, DNA / methods*
  • Software*
  • Sulfites*

Substances

  • Sulfites
  • hydrogen sulfite