KASpOD--a web service for highly specific and explorative oligonucleotide design

Nicolas Parisot; Jérémie Denonfoux; Eric Dugat-Bony; Pierre Peyret; Eric Peyretaillade

doi:10.1093/bioinformatics/bts597

KASpOD--a web service for highly specific and explorative oligonucleotide design

Bioinformatics. 2012 Dec 1;28(23):3161-2. doi: 10.1093/bioinformatics/bts597. Epub 2012 Oct 9.

Authors

Nicolas Parisot¹, Jérémie Denonfoux, Eric Dugat-Bony, Pierre Peyret, Eric Peyretaillade

Affiliation

¹ Clermont Université, Université d'Auvergne, EA 4678 CIDAM, BP 10448, France.

PMID: 23047560
DOI: 10.1093/bioinformatics/bts597

Abstract

Summary: KASpOD is a web service dedicated to the design of signature sequences using a k-mer-based algorithm. Such highly specific and explorative oligonucleotides are then suitable for various goals, including Phylogenetic Oligonucleotide Arrays.

Availability: http://g2im.u-clermont1.fr/kaspod.

Contact: eric.peyretaillade@udamail.fr

Supplementary information: Supplementary data are available at Bioinformatics online.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Algorithms*
Cluster Analysis
Internet*
Oligonucleotide Array Sequence Analysis / methods*
Oligonucleotide Probes / genetics
Software*

Substances

Oligonucleotide Probes