DNA repair in Corynebacterium model

Abstract

Corynebacterium spp. are a group of Gram-positive bacteria that includes plant and animal pathogens, nonpathogenic soil bacteria, and saprophytic species. Our understanding of these organisms is still poor compared with that of other bacterial organisms, but new insights offered by genome sequence data and the elucidation of gene content has provided clues about the nature, genome stability, pathogenicity and virulence of these organisms. We compared 15 Corynebacterium genomes, from pathogenic and nonpathogenic species, focusing on DNA repair genes. DNA repair is a mechanism of great importance in the maintenance of the genomic stability of any organism; inefficiency of this system can promote genomic instability and lead to death. This vulnerability makes it an interesting target in the study of means to control infectious organisms. We found that nucleotide excision repair (NER) was the only pathway whose involved genes were found in all species, suggesting that DNA integrity can be primarily maintained by NER. Recombination repair (RR) is also a well conserved pathway and most RR genes exist commonly in Corynebacterium spp. Absence of recCD genes was also shared by all species, contributing to prevent genome inversions and favoring genomic stability. Mismatch repair (MMR) appeared to be missing, although some genes in this pathway, such mutT, mutY and mutL, are present. Base excision repair (BER) and direct repair pathways are not conserved pathways, since the genes are not shared by all members; however, the existence of some seems to be enough to ensure pathway activity. An interesting fact is the persistence/acquisition of some repair genes in some species, suggesting an important role in DNA maintenance and evolution. These genes can be important targets in the investigation of the role of DNA repair in the pathogenicity of Corynebacterium species and be used as targets in therapeutic intervention. Phylogenetic analysis of uvrABC NER genes showed a pattern of clusters, in which most groups remained fixed. In general, the presence or inexistence of repair genes was shared by all the species we analyzed, and the loss or acquisition of certain DNA repair genes seems to have been an ancestral event.