Definition of the intermediates and mechanism of the anticancer drug bleomycin using nuclear resonance vibrational spectroscopy and related methods

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22419-24. doi: 10.1073/pnas.1016323107. Epub 2010 Dec 13.

Abstract

Bleomycin (BLM) is a glycopeptide anticancer drug capable of effecting single- and double-strand DNA cleavage. The last detectable intermediate prior to DNA cleavage is a low spin Fe(III) peroxy level species, termed activated bleomycin (ABLM). DNA strand scission is initiated through the abstraction of the C-4' hydrogen atom of the deoxyribose sugar unit. Nuclear resonance vibrational spectroscopy (NRVS) aided by extended X-ray absorption fine structure spectroscopy and density functional theory (DFT) calculations are applied to define the natures of Fe(III)BLM and ABLM as (BLM)Fe(III)─OH and (BLM)Fe(III)(η(1)─OOH) species, respectively. The NRVS spectra of Fe(III)BLM and ABLM are strikingly different because in ABLM the δFe─O─O bending mode mixes with, and energetically splits, the doubly degenerate, intense O─Fe─N(ax) transaxial bends. DFT calculations of the reaction of ABLM with DNA, based on the species defined by the NRVS data, show that the direct H-atom abstraction by ABLM is thermodynamically favored over other proposed reaction pathways.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Antibiotics, Antineoplastic / chemistry
  • Antibiotics, Antineoplastic / metabolism
  • Bleomycin / chemistry*
  • Bleomycin / metabolism
  • Deoxyribose / chemistry
  • Deoxyribose / metabolism
  • Ferric Compounds / chemistry*
  • Ferric Compounds / metabolism
  • Hydrogen / chemistry
  • Iron / chemistry*
  • Iron / metabolism
  • Magnetic Resonance Spectroscopy / methods*
  • Models, Molecular
  • Molecular Structure
  • Oxygen / chemistry
  • Thermodynamics
  • Vibration
  • X-Ray Absorption Spectroscopy

Substances

  • Antibiotics, Antineoplastic
  • Ferric Compounds
  • Bleomycin
  • Deoxyribose
  • Hydrogen
  • Iron
  • Oxygen