Structure of a superoxide dismutase and implications for copper-ion chelation

Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):892-901. doi: 10.1107/S0907444908019069. Epub 2008 Jul 17.

Abstract

Superoxide dismutase (SOD) plays a central role in cellular defence against oxidative stress and is of pharmaceutical importance. The SOD from Potentilla atrosanguinea (Pa-SOD) is a unique enzyme as it possesses free-radical scavenging capability at temperatures ranging between 263 and 353 K. The crystal structure of recombinant Pa-SOD has been determined to 2.3 A resolution. The active-site residues are well ordered and additional water molecules are present in place of a bound copper ion. There is a significant difference in the relative orientation of the two subunits of Pa-SOD and asymmetry is also present in numerous hydrogen-bonding interactions. Structures of SODs, both bound with copper and unbound, have been compared with respect to the orientation of the electrostatic and Greek-key loops. This analysis provides new insights into the copper-chelation process in SODs. Several new structural features in Pa-SOD which may be responsible for its unique properties of thermostability and expanded range of antioxidant activity are also highlighted.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Cations / chemistry
  • Copper / chemistry*
  • Crystallography, X-Ray
  • Dimerization
  • Enzyme Stability
  • Hydrogen Bonding
  • Models, Molecular
  • Molecular Sequence Data
  • Plant Proteins / chemistry*
  • Potentilla / enzymology*
  • Sequence Homology, Amino Acid
  • Static Electricity
  • Superoxide Dismutase / chemistry*
  • Temperature
  • Water / chemistry

Substances

  • Cations
  • Plant Proteins
  • Water
  • Copper
  • Superoxide Dismutase