Mono- and trivalent ions around DNA: a small-angle scattering study of competition and interactions

Biophys J. 2008 Jul;95(1):287-95. doi: 10.1529/biophysj.107.123174. Epub 2008 Mar 13.

Abstract

The presence of small numbers of multivalent ions in DNA-containing solutions results in strong attractive forces between DNA strands. Despite the biological importance of this interaction, e.g., DNA condensation, its physical origin remains elusive. We carried out a series of experiments to probe interactions between short DNA strands as small numbers of trivalent ions are included in a solution containing DNA and monovalent ions. Using resonant (anomalous) and nonresonant small angle x-ray scattering, we coordinated measurements of the number and distribution of each ion species around the DNA with the onset of attractive forces between DNA strands. DNA-DNA interactions occur as the number of trivalent ions increases. Surprisingly good agreement is found between data and size-corrected numerical Poisson-Boltzmann predictions of ion competition for non- and weakly interacting DNAs. We also obtained an estimate for the minimum number of trivalent ions needed to initiate DNA-DNA attraction.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Binding Sites
  • Computer Simulation
  • DNA / chemistry*
  • Ions / chemistry*
  • Models, Chemical*
  • Models, Molecular*
  • Nucleic Acid Conformation
  • Scattering, Small Angle*
  • X-Ray Diffraction / methods*

Substances

  • Ions
  • DNA