NC2 mobilizes TBP on core promoter TATA boxes

Nat Struct Mol Biol. 2007 Dec;14(12):1196-201. doi: 10.1038/nsmb1328. Epub 2007 Nov 11.

Abstract

The general transcription factors (GTFs) of eukaryotic RNA polymerase II, in a process facilitated by regulatory and accessory factors, target promoters through synergistic interactions with core elements. The specific binding of the TATA box-binding protein (TBP) to the TATA box has led to the assumption that GTFs recognize promoters directly, producing a preinitiation complex at a defined position. Using biochemical analysis as well as biophysical single-pair Förster resonance energy transfer, we now provide evidence that negative cofactor-2 (NC2) induces dynamic conformational changes in the TBP-DNA complex that allow it to escape and return to TATA-binding mode. This can lead to movement of TBP along the DNA away from TATA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry
  • Electrophoretic Mobility Shift Assay
  • Fluorescence Resonance Energy Transfer
  • Humans
  • Molecular Structure
  • Phosphoproteins / chemistry
  • Phosphoproteins / physiology*
  • Promoter Regions, Genetic*
  • TATA Box*
  • TATA-Box Binding Protein / chemistry
  • TATA-Box Binding Protein / physiology*
  • Transcription Factors / chemistry
  • Transcription Factors / physiology*

Substances

  • Phosphoproteins
  • TATA-Box Binding Protein
  • Transcription Factors
  • down-regulator of transcription 1
  • DNA