Strategy for encoding and comparison of gene expression signatures

Genome Biol. 2007;8(7):R133. doi: 10.1186/gb-2007-8-7-r133.

Abstract

EXALT (EXpression signature AnaLysis Tool) is a computational system enabling comparisons of microarray data across experimental platforms and different laboratories http://seq.mc.vanderbilt.edu/exalt/. An essential feature of EXALT is a database holding thousands of gene expression signatures extracted from the Gene Expression Omnibus, and encoded in a searchable format. This novel approach to performing global comparisons of shared microarray data may have enormous value when coupled directly with a shared data repository.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Validation Study

MeSH terms

  • Animals
  • Cell Line, Tumor
  • Computational Biology / methods*
  • Gene Expression Profiling / methods*
  • Humans
  • Software*