Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains

J Virol. 2006 Sep;80(17):8493-502. doi: 10.1128/JVI.00713-06.

Abstract

Macro domains constitute a protein module family found associated with specific histones and proteins involved in chromatin metabolism. In addition, a small number of animal RNA viruses, such as corona- and toroviruses, alphaviruses, and hepatitis E virus, encode macro domains for which, however, structural and functional information is extremely limited. Here, we characterized the macro domains from hepatitis E virus, Semliki Forest virus, and severe acute respiratory syndrome coronavirus (SARS-CoV). The crystal structure of the SARS-CoV macro domain was determined at 1.8-Angstroms resolution in complex with ADP-ribose. Information derived from structural, mutational, and sequence analyses suggests a close phylogenetic and, most probably, functional relationship between viral and cellular macro domain homologs. The data revealed that viral macro domains have relatively poor ADP-ribose 1"-phosphohydrolase activities (which were previously proposed to be their biologically relevant function) but bind efficiently free and poly(ADP-ribose) polymerase 1-bound poly(ADP-ribose) in vitro. Collectively, these results suggest to further evaluate the role of viral macro domains in host response to viral infection.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate Ribose / analogs & derivatives
  • Adenosine Diphosphate Ribose / chemistry
  • Adenosine Diphosphate Ribose / metabolism*
  • Amino Acid Sequence
  • Crystallography
  • Hepatitis E virus / chemistry*
  • Hepatitis E virus / metabolism
  • Histones / chemistry
  • Histones / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Poly Adenosine Diphosphate Ribose / metabolism*
  • Poly(ADP-ribose) Polymerases / metabolism
  • Semliki forest virus / chemistry*
  • Semliki forest virus / metabolism
  • Severe acute respiratory syndrome-related coronavirus / chemistry*
  • Severe acute respiratory syndrome-related coronavirus / metabolism
  • Structure-Activity Relationship

Substances

  • ADP-ribose 1''-phosphate
  • Histones
  • macroH2A histone
  • Adenosine Diphosphate Ribose
  • Poly Adenosine Diphosphate Ribose
  • Poly(ADP-ribose) Polymerases