Proteinase and growth factor alterations revealed by gene microarray analysis of human diabetic corneas

Invest Ophthalmol Vis Sci. 2005 Oct;46(10):3604-15. doi: 10.1167/iovs.04-1507.

Abstract

Purpose: To identify proteinases and growth factors abnormally expressed in human corneas of donors with diabetic retinopathy (DR), additional to previously described matrix metalloproteinase (MMP)-10 and -3 and insulin-like growth factor (IGF)-I.

Methods: RNA was isolated from 35 normal, diabetic, and DR autopsy human corneas ex vivo or after organ culture. Amplified cRNA was analyzed using 22,000-gene microarrays (Agilent Technologies, Palo Alto, CA). Gene expression in each diabetic corneal cRNA was assessed against pooled cRNA from 7 to 9 normal corneas. Select differentially expressed genes were validated by quantitative real-time RT-PCR (QPCR) and immunohistochemistry. Organ cultures were treated with a cathepsin inhibitor, cystatin C, or MMP-10.

Results: More than 100 genes were upregulated and 2200 were downregulated in DR corneas. Expression of cathepsin F and hepatocyte growth factor (HGF) genes was increased in ex vivo and organ-cultured DR corneas compared with normal corneas. HGF receptor c-met, fibroblast growth factor (FGF)-3, its receptor FGFR3, tissue inhibitor of metalloproteinase (TIMP)-4, laminin alpha4 chain, and thymosin beta(4) genes were downregulated. The data were corroborated by QPCR and immunohistochemistry analyses; main changes of these components occurred in corneal epithelium. In organ-cultured DR corneas, cystatin C increased laminin-10 and integrin alpha(3)beta(1), whereas in normal corneas MMP-10 decreased laminin-10 and integrin alpha(3)beta(1) expression.

Conclusions: Elevated cathepsin F and the ability of its inhibitor to produce a more normal phenotype in diabetic corneas suggest increased proteolysis in these corneas. Proteinase changes may result from abnormalities of growth factors, such as HGF and FGF-3, in DR corneas. Specific modulation of proteinases and growth factors could reduce diabetic corneal epitheliopathy.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Aged
  • Cornea / metabolism*
  • Corneal Diseases / enzymology
  • Corneal Diseases / genetics*
  • Diabetic Retinopathy / enzymology
  • Diabetic Retinopathy / genetics*
  • Fluorescent Antibody Technique, Indirect
  • Gene Expression Profiling
  • Gene Expression Regulation*
  • Growth Substances / genetics*
  • Growth Substances / metabolism
  • Humans
  • Oligonucleotide Array Sequence Analysis
  • Organ Culture Techniques
  • Peptide Hydrolases / genetics*
  • Peptide Hydrolases / metabolism
  • RNA, Messenger / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Tissue Donors
  • Up-Regulation

Substances

  • Growth Substances
  • RNA, Messenger
  • Peptide Hydrolases