Activity, diversity and population size of ammonia-oxidising bacteria in oil-contaminated landfarming soil

FEMS Microbiol Lett. 2005 Sep 1;250(1):33-8. doi: 10.1016/j.femsle.2005.06.057.

Abstract

Chemolithotrophic ammonia-oxidising bacteria (AOB) present in oil-contaminated landfarming soil were studied over two growing seasons in 1999 and 2000. The number of AOB (4-9 x 10(5) cellsg(-1) of dry soil) determined with the quantitative polymerase chain reaction (real-time PCR) and the rate of potential ammonium oxidation (0.05-0.28 microg NO2(-)-N g(-1) of dry soil h(-1)) indicated the presence of stable AOB populations. Denaturing gradient gel electrophoresis (DGGE) profiling and sequence analysis of PCR-amplified AOB 16S rRNA genes showed dominance of Nitrosospira-like sequences in clusters 2 and 3. The present results from the chronically oil-contaminated landfarming soil support the suggested importance of Nitrosospira-like AOB in terrestrial environments.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ammonia / metabolism*
  • Bacteria / classification
  • Bacteria / genetics*
  • Bacteria / isolation & purification
  • Bacteria / metabolism*
  • DNA, Bacterial / genetics
  • DNA, Bacterial / isolation & purification
  • Genes, Bacterial
  • Genetic Variation
  • Nitrosomonadaceae / classification
  • Nitrosomonadaceae / genetics
  • Nitrosomonadaceae / isolation & purification
  • Nitrosomonadaceae / metabolism
  • Oils / metabolism*
  • Oxidation-Reduction
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Soil Microbiology*
  • Soil Pollutants / metabolism*

Substances

  • DNA, Bacterial
  • Oils
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Soil Pollutants
  • Ammonia