Complete nucleotide sequence and genome organization of a dsRNA partitivirus infecting Pleurotus ostreatus

Virus Res. 2005 Mar;108(1-2):111-9. doi: 10.1016/j.virusres.2004.08.017.

Abstract

The nucleotide sequences of the genomic dsRNA mycovirus infecting Pleurotus ostreatus (P. ostreatus virus 1; PoV1) were determined and compared to the sequences of the other mycoviruses belonging to partitiviruses and totivirues. PoV1 dsRNA-1 and dsRNA-2 had genomes of 2296 and 2223 nucleotides, respectively. The purified virus preparations contained isometric particles of 28-30 nm in diameter, and also the same two dsRNAs were isolated from purified virus preparations. The sequences of PoV1 dsRNA-1 and dsRNA-2 had GC contents of 48.4 and 51.5%, respectively. dsRNA-1 had 78 and 97 nucleotides of 5'- and 3'-untranslated region (UTR) while dsRNA-2 had 114 and 198 nucleotides of 5'- and 3'-UTR, respectively. Computer analysis of putative open reading frame (ORF) shows that dsRNA-1 and dsRNA-2 contain a single ORF encoding proteins of 82.2 and 71.1 kDa that show high sequence identity with RNA-dependent RNA polymerase and capsid protein of partitiviruses, respectively. When compared to other dsRNA mycoviruses in a phylogenetic analysis they were found to form a distinct virus clade with partitiviruses, and were more distantly related to totiviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics
  • 5' Untranslated Regions / genetics
  • Amino Acid Sequence
  • Base Composition
  • Base Sequence
  • Capsid Proteins / genetics
  • Conserved Sequence
  • Genome, Viral*
  • Microscopy, Electron
  • Molecular Sequence Data
  • Molecular Weight
  • Open Reading Frames / genetics
  • Phylogeny
  • Pleurotus / virology*
  • RNA Viruses / classification
  • RNA Viruses / genetics*
  • RNA Viruses / isolation & purification*
  • RNA Viruses / ultrastructure
  • RNA, Double-Stranded / genetics
  • RNA, Double-Stranded / isolation & purification
  • RNA, Viral / genetics*
  • RNA, Viral / isolation & purification
  • RNA-Dependent RNA Polymerase / genetics
  • Sequence Homology

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Capsid Proteins
  • RNA, Double-Stranded
  • RNA, Viral
  • RNA-Dependent RNA Polymerase

Associated data

  • GENBANK/AY533036
  • GENBANK/AY533038