Structural basis for novel delta-regioselective heme oxygenation in the opportunistic pathogen Pseudomonas aeruginosa

Biochemistry. 2004 May 11;43(18):5239-45. doi: 10.1021/bi049687g.

Abstract

The Gram-negative bacterium Pseudomonas aeruginosa contains a heme oxygenase (pa-HO) that primarily oxygenates the delta-meso heme carbon [Caignan, G. A., Deshmukh, R., Wilks, A., Zeng, Y., Huang, H. W., Moenne-Loccoz, P., Bunce, R. A., Eastman, M. A., and Rivera, M. (2002) J. Am. Chem. Soc. 124, 14879-14892]. This differs from other previously characterized heme oxygenases, which display regioselectivity for the alpha-meso heme carbon. Here we report the crystal structure of pa-HO at 1.60 A resolution and compare it to the 1.50 A structure of nm-HO from Neisseria meningitidis [Schuller, D. J., Zhu, W., Stojiljkovic, I., Wilks, A., and Poulos, T. L. (2001) Biochemistry 40, 11552-11558]. The crystal structure of pa-HO maintains the same overall fold as other bacterial and mammalian heme oxygenases, including a conserved network of hydrogen-bonded solvent molecules important for dioxygen activation. The novel delta-regioselectivity of heme oxygenation observed by pa-HO is due to the heme being rotated by approximately 100 degrees, which places the delta-meso heme carbon in the same position as the alpha-meso heme carbon in other heme oxygenases. The main interaction in pa-HO that stabilizes the unique heme orientation is a salt bridge between Lys132 and the heme 7-propionate, as well as hydrophobic contacts involving Leu29, Val33, and Phe189 with the heme methyl and vinyl groups.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Heme / analogs & derivatives
  • Heme / chemistry*
  • Heme / metabolism
  • Heme Oxygenase (Decyclizing) / chemistry*
  • Heme Oxygenase (Decyclizing) / metabolism
  • Humans
  • Hydrogen Bonding
  • Hydroxylation
  • Neisseria meningitidis / enzymology
  • Opportunistic Infections / microbiology
  • Propionates / chemistry
  • Protein Structure, Secondary
  • Pseudomonas aeruginosa / enzymology*
  • Rats
  • Structural Homology, Protein
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Propionates
  • Heme
  • Heme Oxygenase (Decyclizing)

Associated data

  • PDB/1SK7