A new method for determining the local environment and orientation of individual side chains of membrane-binding peptides

J Am Chem Soc. 2004 Apr 28;126(16):5078-9. doi: 10.1021/ja032015d.

Abstract

We studied here the binding of the mastoparan X peptide to a zwitterionic lipid bilayer (POPC) and demonstrated that nitrile-derivatized amino acids can be used to determine the hydration state (or change in hydration state) of specific sites of membrane-interactive peptides (upon binding). We have also shown that polarized ATR-FTIR measurements can further be used to uncover information regarding the spatial orientation of individual side chains as well as their conformational preference within the lipid bilayer.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amides / chemistry
  • Cell Membrane / chemistry
  • Hydrophobic and Hydrophilic Interactions
  • Lipid Bilayers / metabolism
  • Magnetic Resonance Spectroscopy
  • Membrane Proteins / chemistry*
  • Peptides / chemistry*
  • Phospholipids / chemistry
  • Protein Binding
  • Protein Structure, Secondary
  • Spectrophotometry, Infrared

Substances

  • Amides
  • Lipid Bilayers
  • Membrane Proteins
  • Peptides
  • Phospholipids