A new method for the preparation of modified oligonucleotides

Org Lett. 2002 May 30;4(11):1827-30. doi: 10.1021/ol025643t.

Abstract

[reaction-see text] N-Nitrothymidine can be transformed into a phosphoramidite building block suitable for oligonucleotide synthesis using the standard phosphite triester solid-phase approach. The N-nitrothymidine residues remain stable during the elongation cycles and react smoothly with primary amines, furnishing oligonucleotides containing N3-modified thymidines. A number of N3-substituted oligonucleotides have been prepared using this methodology, some of them incorporating aminoalkyl or hydroxyalkyl groups.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amines / chemistry
  • Hydrogen / chemistry
  • Indicators and Reagents
  • Oligonucleotides / chemical synthesis*
  • Resins, Plant
  • Spectrometry, Mass, Electrospray Ionization
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

Substances

  • Amines
  • Indicators and Reagents
  • Oligonucleotides
  • Resins, Plant
  • Hydrogen