Two-dimensional maps in soft immobilized pH gradient gels: a new approach to the proteome of the Third Millennium

Electrophoresis. 2002 Jan;23(2):292-7. doi: 10.1002/1522-2683(200202)23:2<292::AID-ELPS292>3.0.CO;2-5.

Abstract

Same major improvements in proteome analysis of cytosolic and membrane proteins by two-dimensional mapping are here reported. A much improved transfer of proteins from the first to the second dimensional sodium dodecyl sulfate (SDS)-gel is obtained by simply diluting the gel matrix, normally composed of 4%T polyacrylamide in all commercially available Immobiline strips down to as low as 3%T. In the analysis of total lysates of platelets, this augmented transfer has been evaluated as being 2-3 times higher than in standard 4%T gels. A second major improvement, in the case of analysis of membrane protein preparations, has been demonstrated to consist in a delipidation step in a tertiary solvent mixture composed of tri-n-butyl phosphate:acetone:methanol in a 1:12:1 ratio. By adopting this protocol, large amounts of spectrins (240-220 kDa, filamentous proteins of the red blood cell membranes) could be transferred vs. essentially none when delipidation was omitted. The present report also confirms the importance of a reduction and alkylation step of the protein sample prior to all electrophoretic steps, including focusing in the Immobiline gel, as recently reported by Herbert et al.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acrylic Resins
  • Blood Platelets / chemistry
  • Electrophoresis, Gel, Two-Dimensional / methods*
  • Electrophoresis, Polyacrylamide Gel / methods*
  • Erythrocyte Membrane / chemistry*
  • Humans
  • Hydrogen-Ion Concentration
  • Membrane Proteins / analysis*
  • Peptide Mapping / methods
  • Proteome / analysis*

Substances

  • Acrylic Resins
  • Membrane Proteins
  • Proteome
  • polyacrylamide gels